Split .ape files with cue and convert to flac format is not so difficult.

We do it on an Ubuntu box for example:

First, install the dependency of shntool, flac, mac, cuetools

sudo aptitdue install flac shntool cuetools

and download mac package in form of deb or tarball.

Run the following command in a terminal:

shntool split -f FileName.cue -t '%n. %t' -o flac FileName.ape

and the output .flac files’ name follows this sequence:

1. Track1name.flac

2.Track2name.flac